Columbus

 Shuttlecraft 5 / 1 / 3
No Staffing/Command requirements
Restriction Box: Has no transporters.
Standard Equipment
Special skill: May be reported, carried, and launched aboard your Constitution-class ships.
May be reported, carried, and launched aboard your Constitution-class ships.

Defiant

Defaint Class 8 / 10 / 9 
  Restriction Box: Cannot carry ships aboard except shuttlepods.
Tractor Beam

Delta Flyer

Shuttlecraft 8 / 7 / 7 
No Staffing/Command requirements
Standard Equipment
Special skill:  Evasive Maneuvers.
May report aboard your U.S.S. Voyager (for free).
May report aboard your U.S.S. Voyager (for free).

Future Enterprise

Galaxy Class 13 / 10 / 9
    Cloaking Device / Holodeck / Tractor Beam

Guingouin

Condor Class 6 / 6 / 6 
 Standard Equipment
Special skill: When you win an engagement you began involving this ship, if each ship you command is a ship, score 10 points.
When you win an engagement you began involving this ship, if each ship you command is a ship, score 10 points.

H.M.S. Bounty
 

B'rel Class 7 / 6 / 6
 Restriction Box: Cannot carry ships aboard.
Cloaking Device / Tractor Beam

I.S.S. Constitution

 Constitution Class 6 / 5 / 6 
 Tractor Beam
Special skill:  Any personnel.

I.S.S. Enterprise

Constitution Class 6 / 6 / 6 
 Tractor Beam
Special skill:  Any personnel.

Maquis Raider

 Condor Class 6 / 6 / 6 
 Standard Equipment
Special skill: When you win an engagement involving this ship, the loser places one of his or her personnel involved on top of that personnel's owner's deck.
When you win an engagement involving this ship, the loser places one of his or her personnel involved on top of that personnel's owner's deck.

Rebel Interceptor

 Perikian Class 6+X / 8 / 6 
 Standard Equipment
Special skill: May take off or land once each turn.
X = 3 if moving within a region.
May take off or land once each turn.
X = 3 if moving within a region.

Runabout

 Runabout Class 7 / 5 / 5
No Staffing/Command requirements
Standard Equipment

Starship Constitution (MM)

 Constitution Class 6 / 4 / 6
 Tractor Beam
Special skill:  Any Federation personnel.

Starship Constitution (TMP)

 Constitution Class 6 / 5 / 6
 Tractor Beam
Special skill:  Any Federation personnel.

Starship Enterprise (MM)

Constitution Class 6 / 5 / 6
 Tractor Beam
Special skill:  Any Federation personnel.

Starship Enterprise (TMP)

Constitution Class 6 / 6 / 6
 Tractor Beam
Special skill:  Crew Reassignment.

Starship Excelsior

Excelsior Class 6 / 6 / 7
  Stellar Cartography / Tractor Beam

Stolen Attack Ship
 

Attack Ship Class 6 / 8 / 8
 Energy Dampener / Invasive Transporters

Type 18 Shuttlepod

 Shuttlepod 5 / 2 / 4
No Staffing/Command requirements
Restriction Box: Has no transporters. Holds two personnel.
Standard Equipment
Special skill: May report with crew (each must have Navigation) to your Defiant-class ship.
May report with crew (each must have Navigation) to your Defiant-class ship.

Type 9 Shuttlecraft

 Shuttlecraft 6 / 5 / 5
No Staffing/Command requirements
Standard Equipment
Special skill: May report aboard your Intrepid- and Nova-class ships.
May report aboard your Intrepid- and Nova-class ships.

Type VI Shuttlecraft

 Type IV Shuttlecraft 6 / 2 / 2
No Staffing/Command requirements
Standard Equipment

U.S.S. Bozeman

Soyuz Class 5 / 8 / 7
 Tractor Beam
Special skill: WEAPONS + 2 vs. Borg Ship and Borg Ship Dilemma.
WEAPONS + 2 vs. Borg Ship and Borg Ship Dilemma.

U.S.S. Brittain

Miranda Class 6 / 5 / 6
 Tractor Beam

U.S.S. Danube

 Danube Class 7 / 4 / 5
No Staffing/Command requirements
Standard Equipment
Special skill: Reports for free to Docking Pads.
Reports for free to Docking Pads.

U.S.S. Dauntless
 

Dauntless Class 10 / 7 / 8 
   Holodeck
Special skill: May be fully staffed by Arturis.
 Quantum Slipstream Drive.
May be fully staffed by Arturis.

U.S.S. Defiant

Defaint Class 8 / 10 / 9
  Restriction Box: Cannot carry ships aboard except shuttlepods.
Cloaking Device / Tractor Beam

U.S.S. Defiant, Prototype Warship

  Defaint Class 8 / 10 / 10
    Cloaking Device / Tractor Beam
Special skill: While this ship is in an engagement, it is Weapons +1 and Shields +2.
While this ship is in an engagement, it is Weapons +1 and Shields +2.

U.S.S. Drake

Wambundu Class 7 / 8 / 7
  Holodeck / Tractor Beam

U.S.S. Enterprise

Galaxy Class 9 / 8 / 9
   Holodeck / Tractor Beam

U.S.S. Enterprise-A

Constitution Class 6 / 6 / 7
OR James T. Kirk. Tractor Beam
Special skill:  Any Federation personnel OR James T. Kirk.

U.S.S. Enterprise-B

Excelsior Class 7 / 6 / 7
  Restriction Box: When reported, attributes all -2 until end of turn.
Standard Equipment
Special skill: El-Aurians may report aboard.
Tractor Beam (unless any attribute is reduced).
El-Aurians may report aboard.
Tractor Beam (unless any attribute is reduced).

U.S.S. Enterprise-C

Ambrassador Class 8 / 7 / 8
   Tractor Beam
Special skill: Enters play damaged at any location.
Enters play damaged at any location.

U.S.S. Enterprise-E

Sovereign Class 10 / 9 / 10
   Holodeck / Tractor Beam
Special skill: WEAPONS + 3 vs. Borg Ship and Borg Ship Dilemma.
WEAPONS + 3 vs. Borg Ship and Borg Ship Dilemma.

U.S.S. Enterprise-E, Federation Envoy

  Sovereign Class 9 / 9 / 9
    Tractor Beam
Special skill: When you complete a planet mission, if this ship is at that mission, score 5 points.
When you complete a planet mission, if this ship is at that mission, score 5 points.

U.S.S. Equinox
 

Nova Class 7+X / 6 / 7 
  Holodeck / Tractor Beam
Special skill: X = 4 if any crew member has "U.S.S. Equinox" in lore.
X = 4 if any crew member has "U.S.S. Equinox" in lore.

U.S.S. Excelsior

 Excelsior Class 6 / 6 / 7
  Tractor Beam

U.S.S. Galaxy

 Galaxy Class 8 / 7 / 9
   Holodeck / Tractor Beam

U.S.S. Grissom

Oberth Class 7 / 4 / 6
 SCIENCE / Tractor Beam

U.S.S. Hood

Excelsior Class 7 / 6 / 7
  Tractor Beam

U.S.S. Intrepid

 Intrepid Class 8 / 7 / 8
  Holodeck / Tractor Beam

U.S.S. Jupiter

Akira Class 9 / 8 / 8
   Holodeck / Tractor Beam
Special skill:  Chain Reaction Pulsar.

U.S.S. Miranda

 Miranda Class 6 / 5 / 5
 Tractor Beam

U.S.S. Nebula

 Nebula Class 8 / 7 / 8
  Holodeck / Tractor Beam

U.S.S. Oberth

 Oberth Class 6 / 4 / 7
 Tractor Beam

U.S.S. Odyssey

Galaxy Class 8 / 8 / 8
   Holodeck / Tractor Beam
Special skill: Attributes all + 1 in Gamma Quadrant.
Attributes all + 1 in Gamma Quadrant.

U.S.S. Pasteur

Olympic Class 13 / 6 / 7 
   Holodeck / MEDICAL / Tractor Beam
Special skill: If your Future Enterprise in play, it has an icon and reduces its stuffing by one icon.
If your Future Enterprise in play, it has an icon and reduces its stuffing by one icon.

U.S.S. Pegasus

Oberth Class 6 / 4 / 8
 Tractor Beam

U.S.S. Phoenix

Nebula Class 7 / 7 / 8
  Holodeck / Tractor Beam

U.S.S. Prometheus
 

Promethus Class 10 / 9 / 9
   Holodeck / Tractor Beam
Special skill:  May download Multivector Assault Mode when in battle.

U.S.S. Reliant
 

Miranda Class 6 / 6 / 6
 Tractor Beam

U.S.S. Rio Grande

Danube Class 7 / 5 / 5
No Staffing/Command requirements
Standard Equipment
Special skill:  Activate Tractor Beam.

U.S.S. Sao Paulo

Defaint Class 8 / 9 / 10
  Restriction Box: Cannot carry ships aboard except shuttlepods.
Tractor Beam

U.S.S. Sovereign

   Sovereign Class 9 / 9 / 9
    Tractor Beam

U.S.S. Stargazer

Constellation Class 8 / 7 / 6
  Tractor Beam
Special skill: Once each game, may be token from discard pile to hand.
Once each game, may be token from discard pile to hand.

U.S.S. Sutherland

Nebula Class 7 / 7 / 7
  Holodeck / Tractor Beam

U.S.S. Thunderchild

Akira Class 10 / 7 / 8
   Holodeck / Tractor Beam
Special skill: SHIELDS +4 vs. Borg ships and Borg Ship dilemma.
SHIELDS +4 vs. Borg ships and Borg Ship dilemma.

U.S.S. Valiant, Red Squad Training Ship

  Defiant Class 8 / 10 / 10
    Standard Equipment
Special skill: This ship is attributes +1 for each of your Cadets aboard (limit +4).
This ship is attributes +1 for each of your Cadets aboard (limit +4).

U.S.S. Voyager

Intrepid Class 9 / 8 / 8 
  Holodeck / Tractor Beam
Special skill:  Bio-Neural Gel Pack.
 Blue Alert.

U.S.S. Yamato

Galaxy Class 8 / 8 / 8
   Holodeck / Tractor Beam

U.S.S. Yangtzee Kiang

Danube Class 7 / 5 / 6
No Staffing/Command requirements
Standard Equipment
Special skill: May be used by Bajoran affilation.
May be used by Bajoran affilation.